Google scholar profile

Patents

  1. M. Madec, J.-B. Fasquel, W. Uhring, Processeur opto-électronique de reconstruction de données tomographiques, French patent N° FR2906375 of 28th March 2008 submitted on 22nd September 2006 by Micro Module, CNRS-InESS, IRCAD and ULP. [link,pdf]

Book chapters

  1. M. U. Ahmed, S. Begum, and J.-B. Fasquel, editors. Internet of Things (IoT) Technologies for HealthCare, Proceedings of the 4th International Conference, HealthyIoT 2017, Angers, France, October 24-25, 2017. Springer, 2018.
  2. L. Soler, S. Nicolau, A. Hostettler, J.-B. Fasquel, V. Agnus, A. Charnoz, J. Moreau, B. Dallemagne, D. Mutter and J. Marescaux. Computer Assisted Digestive Surgery, M. Garbey et al. (Editors), Computational Surgery and Dual Training, ISBN 978-1-4419-1122-3, Springer, p. 139-153, 2010 [link,preprint]

International journals

  1. P. Coupeau, J.-B. Fasquel, E. Mazerand, P. Menei, C.N. Montero-Menei, M. Dinomais. Patch-based 3D U-Net and transfer learning for longitudinal piglet brain segmentation on MRI. Computer Methods and Programs in Biomedicine. 2022 [link][preprint]
  2. J. Chopin, J.-B. Fasquel, H. Mouchere, R. Dahyot, I Bloch, Model-based inexact graph matching on top of CNNs for semantic scene understanding, Submitted to Computer Vision and Image Understanding, 2022 [preprint]
  3. J.-B. Fasquel, N. Delanoue,A graph based image interpretation method using a priori qualitative inclusion and photometric relationships, IEEE Transactions on Pattern Analysis and Machine Intelligence, 2019, IF: 9.455 (2017) [link] [Code-Database] [github] [preprint]
  4. J.-B. Fasquel, N. Delanoue, An approach for sequential image interpretation using a priori binary perceptual topological and photometric knowledge and k-means based segmentation, Journal of the Optical Society of America A, 2018, IF: 1.6 (2016), [link] [preprint].
  5. F.B.P. Malavazi, R. Guyonneau, J.-B. Fasquel and S. Lagrange and F. Mercier, LiDAR-only based navigation algorithm for an autonomous agricultural robot, Computers and Electronics in Agriculture, Vol. 154, pp 71-79, 2018, IF: 2.427 (2017)
  6. J.-B. Fasquel, A. Lécluse, C. Cavaro-Ménard, S. Willoteaux, A semi-automated method for measuring the evolution of both lumen area and blood flow in carotid from Phase Contrast MRI, Computers In Biology And Medicine, Vol. 66, 2015 [link] [preprint]
  7. P. Calès, J. Chaigneau, G. Hunault, S. Michalak, C. Cavaro-Menard, J.-B. Fasquel, S. Bertrais, M.-C. Rousselet, Automated morphometry provides accurate and reproducible virtual staging of liver fibrosis in chronic hepatitis C, Journal of Pathology Informatics, Vol. 6, Issue 1, 2015 [link] [preprint]
  8. P. Cales, J. Chaigneau, G. Hunault, S. Michalak, C. Cavaro-Menard, J.B. Fasquel, S. Bertrais, M.C. Rousselet, P489 "Virtual expert" staging by automated morphometry improves diagnosis and prognostic value of liver fibrosis, Journal of Hepatology, Vol. 60, Issue 1, April, 2014 [link] [preprint], IF: 10.4 (2015)
  9. A. delahaies, D. Rousseau, J.-B. Fasquel, F. Chapeau-Blondeau, Local-feature-based similarity measure for stochastic resonance in visual perception of spatially structured images, Journal of the Optical Society of America A, 29, 1211-1216, 2012, [link] IF: 1.562 (2011 JCR)
  10. J.-B. Fasquel,Johan Moreau, A design pattern coupling role and component concepts: Application to medical software, The Journal of Systems and Software, 84, 847-863, 2011 [link, preprint], IF: 1.293 (2010 JCR)
  11. M. Madec, W. Uhring, E. Hueber,J.-B. Fasquel, J. Bartinger, Y. Hervé, Methods for improvement of spatial light modulator image rendering, Optical Engineering, 48(3), 1, 2009 [link], IF: 0.722 (2008 JCR)
  12. M. Madec., J.B. Fasquel, W. Uhring, P. Joffre, Y. Hervé, Optoelectronic implementation of helical cone-beam computed tomography algorithms, Optical Engineering 47, 2008 [link], IF: 0.757 (2007 JCR)
  13. M. Madec., J.B. Fasquel, W. Uhring, P. Joffre, Y. Hervé, Optical implementation of the filtered backprojection algorithm, Optical Engineering 46, 2007 [link], IF: 0.885
  14. M. Madec., W. Uhring, J.B. Fasquel, P. Joffre, Y. Hervé, Compatibility of temporal multiplexed spatial light modulator with optical image processing, Optics Communications. 275, 27-37, 2007 [link], IF: 1.35
  15. J.B. Fasquel, G. Brocker, J. Moreau, V. Agnus, N. Papier, C. Koehl, L. Soler, J. Marescaux, A Modular and Evolutive Component Oriented Software Architecture for Patient Modeling, Computer Methods and Programs in Biomedecine, 2006, Volume 83, Issue 3 [link,preprint], IF: 1.51
  16. J.B. Fasquel, V. Agnus, J. Moreau, L. Soler, J. Marescaux. An Interactive Medical Segmentation System Based on the Optimal Management of Regions of Interest Using Topological Medical Knowledge, Computer Methods and Programs in Biomedicine 2006 ; 216-230, Volume 82, Issue 3 [link,preprint], IF: 1.51
  17. J.B. Fasquel, V. Agnus and J. Lamy, An efficient and generic extension to ITK to process arbitrary shaped regions of interest, Computer Methods and Programs in Biomedecine, 2006, Volume 81, Issue 1, January [link,preprint], IF: 1.51
  18. J.B. Fasquel, M. Bruynooghe, A hybrid opto-electronic method for real-time automatic verification of handwritten signatures, International Journal for Document Analysis and Recognition, No. 1, March 2004, pp. 56-68 [link,preprint], IF: 0.4
  19. J.B. Fasquel, M. Bruynooghe, New hybrid opto-electronic method for fast and unsupervised object detection, Optical Engineering, Vol. 42, Issue 11, p. 3352-3364, November 2003 [link,preprint], IF: 0.885

International conferences

  1. J. Chopin, J.-B. Fasquel, H. Mouchère, R. Dahyot, I Bloch, QAP Optimisation with Reinforcement Learning for Faster Graph Matching in Sequential Semantic Image Analysis, International Conference on Pattern Recognition and Artificial Intelligence, 2022 [preprint]
  2. J. Chopin, J.-B. Fasquel, H. Mouchère, R. Dahyot, I Bloch, Improving semantic segmentation with graph-based structural knowledge, International Conference on Pattern Recognition and Artificial Intelligence, 2022 [preprint]
  3. P. Coupeau, J.-B. Fasquel, M. Dinomais, On the relevance of edge-conditioned convolution for GNN-based semantic image segmentation using spatial relationships, International Conference on Image Processing Theory, Tools and Applications, 2022 [preprint]
  4. J. Chopin, J.-B. Fasquel, H. Mouchere, R. Dahyot, I Bloch. Semantic image segmentation based on spatial relationships and inexact graph matching, International Conference on Image Processing Theory, Tools and Applications (IPTA), Paris, France, 2020 [preprint]
  5. F. Mouney, T. Tiplica, J.-B. Fasquel, M. Hallab, M. Dinomais. A new blood pressure estimation approach using ppg sensors: Subject specific evaluation over a long-term period, International Summit Smart City 360°, 2020 [link][preprint]
  6. A. Durandeau, J.-B. Fasquel, I. Bloch, E Mazerand, P Menei, C. Montero-Menei, M. Dinomais. Structural information and hypergraph matching for MRI piglet brain extraction, 10th International Conference on Pattern Recognition Systems, Tours, France, 2019 [link] [preprint]
  7. F. Mouney, T. Tiplica, M. Hallab, M. Dinomais, J.-B. Fasquel. Towards a smartwatch for cuff-less blood pressure measurement using PPG signal and physiological features, EAI International Conference on IoT Technologies for HealthCare, 2019 [link][preprint]
  8. A. Jamin, J.-B. Fasquel, A. Humeau-Heurtier, P. Abraham, G. Leftheriotis, and S. Henni. Characterization of home-acquired blood pressure time series using multiscale entropy for patients treated against kidney cancer. In Fourth International Conference on IoT Technologies for HealthCare, Angers, France, 2017
  9. A. Jamin, J.-B. Fasquel, M. Lhommeau, E. Cornet, S. Abadie-Lacourtoisie, S. Henni and G. Leftheriotis, An aggregation plateform for IoT-based healthcare: illustration for bioimpedancemetry, temperature and fatigue level monitoring, Internet of Things Technologies for HealthCare, Third International Conference, HealthyIoT 2016, Västerås, Sweden, October 18-19, 2016
  10. A. Vergnaud, J.-B. Fasquel, L. Autrique, Python-based internet tools in control education, IFAC Workshop on Internet Based Control Education IBCE15 — Brescia (Italy), November 4-6, 2015
  11. G. Trébuchet, J.-B. Fasquel, A. Lecluse, C. Cavaro Ménard, S. Willoteaux, Region-based active contours for computer-aided analysis of carotid Phase Contrast MRI, The 26th IEEE International Symposium on Computer-Based Medical Systems, Porto, Portugal, 20-22 June, 2013
  12. G. Trébuchet, J.-B. Fasquel, C. Cavaro-Ménard, S. Willoteaux, Coupling anatomical and functional information for the computer-aided delineation of Phase-Contrast MRI images using active contours, IPTA 2012 : International Conference on Image Processing Theory, Tools and Applications, Istanbul, Turkey, 15-18 October, 2012
  13. Soler L, Nicolau S, Hostettler A, Fasquel JB, Agnus V, Charnoz A, Moreau J, Dallemagne B, Mutter D, and Marescaux J, Virtual Reality and Augmented Reality applied to endoscopic and NOTES procedures. IFMBE (Medical Physics and Biomedical Engineering) proceedings (springer ed.), 25(6):362-365, 2009. [link,preprint]
  14. Fasquel J.B., Chabre G., Zanne P., Nicolau S., Agnus V., Soler L., De Mathelin, M., Marescaux J., A role-based component architecture for computer assisted interventions: illustration for electromagnetic tracking and robotized motion rejection in flexible endoscopy, Workshop on Systems & Architecture for Computer Assisted Intervention, the 12th International Conference on Medical Image Computing and Computer Assisted Intervention, London, MICCAI 2009 [link,preprint]
  15. J.B. Fasquel, J. Waechter, S. Nicolau, V. Agnus, L. Soler, J. Marescaux, A XML based component oriented architecture for image guided surgery : illustration for the video based tracking of a surgical tool, Workshop on Systems Architecture for Computer Assisted Intervention, the 11th International Conference on Medical Image Computing and Computer Assisted Intervention, New York, MICCAI 2008 [link,preprint]
  16. L. Soler, S. Nicolau, J.B. Fasquel, V. Agnus, A. Charnoz, A. Hostettler, J. Moreau, C. Forest, D. Mutter, J. Marescaux. Virtual reality and augmented reality applied to laparoscopic and notes procedures.Biomedical Imaging: From nano to macro, 2008, ISBI 2008, 5th IEEE International Symposium on. 1399-1402 [link,preprint]
  17. M. Madec., E. Hueber, W. Uhring, J.B. Fasquel, Y. Hervé. Procedures for SLM image quality improvement, European Optical Society Annual Meeting 2008, Paris (France), September 29-October 2, 2008, Proc. On CD.
  18. M. Madec., W. Uhring, J.B. Fasquel, P. Joffre, Y. Hervé, FLC-SLM dynamic improvement with temporal multiplexing: Application to optical image processing, Proc. SPIE 6183, 2006, pp. 390-399, Photonics Europe 2006, Strasbourg, (France), April 3-7, 2006
  19. G. Sittler, P. Twardowski, J-B. Fasquel, J. Fontaine, Conceiving a specific holographic combiner for an augmented reality HMD dedicated to surgical applications. Proceeding SPIE Vol. 6191, Biophotonics and New Therapy Frontiers , Paper Number: 61911S, Photonics Europe, Strasbourg, 3-7 avril 2006.
  20. J.B. Fasquel, V. Agnus, L. Soler, J. Marescaux, A Hierarchical Topological Knowledge Based Image Segmentation Approach Optimizing the Use of Contextual Regions of Interest: Illustration for Medical Image Analysis, In Proceedings of the IEEE International Conference on Image Processing, Atlanta (USA), 08-11 Octobre 2006, p777-780
  21. J.B. Fasquel, G. Brocker, J. Moreau, V. Agnus, N. Papier, C. Koehl, L. Soler, J. Marescaux, A Modular and Evolutive Software for Patient Modelling Using Components, Design Patterns and a Formal XML-Based Component Management System. In proceedings of the 19th IEEE International Symposium on Computer-Based Medical Systems, Salt Lake City (USA), 22-23 Juin 2006
  22. J.B. Fasquel and V. Agnus, Improving genericity and performances of medical systems and softwares based on image analysis, The 18th IEEE International Symposium on Computer-Based Medical Systems, June 23-24, 2005, Dublin, 247 - 252
  23. J.B. Fasquel, C. Stolz and M. Bruynooghe, A method for noise removal and object detection based on data expansion by multiresolution and data compression by principal component analysis 5th Asian Conference on Computer Vision (ACCV’02), p. 261-266, Melbourne, Australia, janvier 2002.
  24. J.B. Fasquel, M. Bruynooghe,A hybrid opto-electronic method for real-time automatic verification of handwritten signatures, Digital Image Computing Techniques and Applications (DICTA’02), p. 213-218, Melbourne, Australia, janvier 2002.
  25. J.B. Fasquel, C. Stolz and M. Bruynooghe, Real-time verification of handwritten signatures using a hybrid opto-electronical method, 2nd IEEE R8 – Eurasip Symposium on Image and Signal Processing and Analysis (ISPA’01), p. 552-557, Pula, Croatia, juin 2001.
  26. J.B. Fasquel, M. Bruynooghe, Hybrid optoelectronic processor for the delineation of tumours of the liver from CT-Scan images, Proceedings of SPIE : Wave Optics and VLSI Photonic Device for Information Processing, Vol. 4435, p. 88-95, San Diego, USA, juillet 2001.

National conferences

  1. J.-B. Fasquel, C. Jeanguillaume, Python en signal-image: éléments sur le langage, les outils, l’architecture, les fonctionnalités et la communauté. Colloque Gretsi, 2015. [preprint]
  2. J.-B. Fasquel, N. Delanoue, Exploitation des relations qualitatives topologiques et photométriques a priori pour le seuillage d’images en niveaux de gris par k-means, XXIVe Colloque Gretsi - Traitement du Signal et des Images - Brest - 3 au 6 Sept 2013.
  3. G. Trébuchet, J.-B. Fasquel, C. Cavaro-Ménard, S. Willoteaux, Utilisation d’un fantôme dans la segmentation d’images IRM de flux, 4ième Journées des Démonstrateurs en Automatique, Angers, 12-13 Juin, 2013
  4. Agnès Delahaies, David Rousseau, Jean-Baptiste Fasquel, François Chapeau-Blondeau, Influence de la structure spatiale des images lors de la quantification de la résonance stochastique dans la perception visuelle, GRETSI, 5-8 Septembre 2011, Bordeaux
  5. G. Trebuchet, C. Cavaro-Ménard, J.-B. Fasquel, S. Willoteaux, Logiciel d'analyse de séquences de vélocimétrie en IRM. 3ième Journées des Démonstrateurs en Automatique,30 novembre – 1 décembre 2010, Angers
  6. M. Madec., J.B. Fasquel, W. Uhring, P. Joffre, Y. Hervé, Processeurs optoélectroniques dédiés aux algorithmes de reconstruction d'images en tomographie, 8ème Colloque Francophone du Club Contrôles et Mesures Optiques pour l'Industrie (CMOI 2007), Arcachon (France), November 19-23, 2007.
  7. M. Madec., J.B. Fasquel, W. Uhring, P. Joffre, Y. Hervé, La microélectronique et le traitement optique de l'information, 9ièmes Journées Pédagogiques du CNFM, Saint Malo (France), November 22-24, 2006
  8. J.B. Fasquel, M. Madec, W. Uhring, K. Bouamama, P. Joffre, Y. Hervé, Filtrage optique de données médicales, Colloque international OPTRO 2005, Paris (France), May 9-12, 2005.
  9. M. Madec, W. Uhring, J.B. Fasquel, K. Bouamama, P. Joffre, Y. Hervé, Amélioration de la dynamique des modulateurs spatiaux de lumière rapides par multiplexage temporel. Application à la corrélation optique, Cinquième colloque francophone "Méthodes et Techniques Optiques pour l'Industrie". 15-19 novembre 2004, Saint-Etienne. pages 312-318.
  10. K. Bouamama, J.B. Fasquel, P. Joffre, M. Madec, W. Uhring, Y. Hervé, Modulateurs spatiaux de lumière et filtrage optique rapide de données médicales, 5ième Colloque Francophone du Club Contrôles et Mesures Optiques pour l'Industrie (CMOI 2004), Saint-Etienne (France), November 15-19, 2004, Actes pp. 570-576.
  11. S. Nicolau, A. Garcia, X. Pennec, L. Soler, N. Ayache, J.B. Fasquel, Guidage de ponctions percutanées à l'aide d'un système de vision basé sur une méthode de recalage 3D/2D, Colloque Imagerie pour les sciences du vivant et de l'ingénieur (IMVIE03), Strasbourg, 2003.
  12. S. Nicolau, X. Pennec, L. Soler, N. Ayache, J.B. Fasquel, J. Marescaux, Vision augmentée de structures anatomiques abdominales recalées par stéréoscopie. Quatrième colloque francophone. Méthodes et Techniques Optiques pour l'Industrie, volume 2, Belfort, pages 413--418, Novembre 2003.
  13. J.B. Fasquel, L. Soler et E. Soubari, Utilisation d’un corrélateur optique pour la détection des tumeurs cancéreuses du foie, Colloque contrôles et mesures optiques pour l’industrie, p. 427-432, Saint-Aubin de Médoc, Novembre 2002.

Some seminars

  1. J.-B. Fasquel, Python for medical imaging, processing and visualization. Institut Polytechnique de Sétubal, Sétubal, Portugal, 20 Mai 2015.
  2. J.-B. Fasquel, Généricité en traitement d'images: niveau algorithmique et logiciel, Séminaire invité, Laboratoire de Recherche et Développement de l'EPITA (Ecole pour l'informatique et les techniques avancées), 31 Mars 2010. [link,talk]
  3. J.B. FasquelQuelques implications de l’optique dans la chirurgie de l’appareil digestif, Salon de l’optique, Porte de Versailles, Paris, 22-24 Octobre 2002.